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Filter Summary Specifications

Process Details

  • Name: filter_summary
  • Process UUID: c663xi789n6owgiqpnkqzgml5kwgw0
  • Process Group: SingleCell

Overview

This process generates comprehensive filtration summary reports for single-cell RNA sequencing data analysis. It creates detailed HTML reports documenting the filtering criteria applied during quality control steps, providing researchers with clear visualization and statistics of cell and gene filtering outcomes.

This process is implemented in Bash, which invokes a Python script for report generation and data processing.

Key Functionality

  • Filtration Report Generation: Creates detailed HTML reports summarizing filtering criteria and outcomes
  • Summary Statistics Compilation: Generates TSV files with overall and criteria-specific filtration statistics
  • Quality Control Documentation: Provides comprehensive documentation of filtering steps applied to single-cell data

Input/Output Specification

Inputs

Required Inputs

  • Input TSV File
    • Description: Tab-separated values file containing single-cell filtering data and statistics
    • Format: TSV

Outputs

  • HTML Filtration Report
    • Description: Comprehensive HTML report containing filtration summary statistics, visualizations, and quality control metrics
    • Format: HTML

References & Resources

  • Tool Documentation: Contact the team for details on build_filtration_report.py