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Concat Statistics Specifications

Process Details

  • Name: concat_statistics
  • Process UUID: f931ad2xal81i2vzninrnsuwqfp5pi
  • Process Group: Pre_Processing

Overview

This process consolidates statistical data from multiple CSV files into a single comprehensive report. It creates a final summary of read statistics by adding a standardized header to existing CSV data and organizing the output in a dedicated reports directory.

This process is implemented in Bash.

Key Functionality

  • Header Addition: Adds a standardized header row with column names for sample identification and read statistics
  • File Organization: Creates a dedicated final_reports directory for output organization
  • Data Consolidation: Combines header information with existing CSV data to create a complete statistical report

Input/Output Specification

Inputs

Required Inputs

  • CSV File
    • Description: Input CSV file containing read statistics data
    • Format: CSV

Outputs

  • Final Read Statistics
    • Description: Consolidated CSV file with standardized headers containing sample names, processing steps, read counts, proportions, sizes, and mean read lengths
    • Format: CSV (saved as final_reports/final_read_stats.csv)

Parameters & Settings

No configurable parameters are available for this process.

References & Resources

  • Tool Documentation: This process uses standard Bash commands for file manipulation and organization.