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Sequential Mapping Summary Specifications

Process Details

  • Name: Sequential Mapping Summary
  • Process UUID: 17fc5b14-e169-11e9-be30-e0aab38271b1
  • Process Group: Misc.

Overview

This process transforms TSV tables containing sequential mapping results to generate both short and detailed summary reports. It consolidates mapping statistics from multiple input files, organizing the data into comprehensive summary tables that provide different levels of detail about read mapping outcomes.

This process is implemented in Perl.

Key Functionality

  • Data Consolidation: Aggregates mapping statistics from multiple TSV input files into unified summary tables
  • Dual Summary Generation: Creates both short and detailed summary reports with different levels of granularity
  • Read Classification: Organizes mapped reads into categories including total reads, filtered reads, unique mappings, and multi-mappings
  • Statistical Aggregation: Compiles mapping statistics across different genomic elements or reference sequences

Input/Output Specification

Inputs

Required Inputs

  • outputFileTSV
    • Description: TSV file containing sequential mapping results with read counts and mapping statistics
    • Format: TSV

Outputs

  • outputFileTSV

    • Description: Short summary table with consolidated mapping statistics
    • Format: TSV

  • outputFile

    • Description: Detailed summary table with comprehensive mapping breakdown including unique and multi-mapping statistics
    • Format: TSV

References & Resources

  • Tool Documentation: Contact the team for details on the Perl script implementation