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Aggregate Dnadiff Specifications

Process Details

  • Name: aggregate dnadiff
  • Process UUID: f931lt2jl183kwzisn4lwieil3cvk0
  • Process Group: MAG-qc

Overview

This process aggregates DNA difference analysis data across all metagenomic bins within a sample, consolidating comparative genomic information into a unified report. The process is designed for quality control workflows in metagenome-assembled genome (MAG) analysis pipelines.

This process is implemented in Bash.

Key Functionality

  • Data Aggregation: Combines DNA difference analysis results from multiple bins into a single consolidated report
  • Conditional Processing: Handles cases where refined bins may or may not be present in the sample
  • Output Organization: Creates structured directory layout for organized storage of aggregated results

Input/Output Specification

Inputs

Required Inputs

  • outputFileTSV
    • Description: Set of TSV files containing DNA difference analysis results from individual bins
    • Format: TSV (Tab-Separated Values)

Outputs

  • outFileTSV
    • Description: Aggregated DNA difference report containing consolidated comparative genomic data across all bins
    • Format: TSV (Tab-Separated Values)

Parameters & Settings

This process does not have user-configurable parameters in the Foundry UI.

References & Resources

  • Tool Documentation: Contact the team for details on the aggregation script implementation