Skip to content

Aggregate Cov Specifications

Process Details

  • Name: aggregate_cov
  • Process UUID: f931w18llbya8umwdn7d2wo7g244z3
  • Process Group: MAG-qc

Overview

This process aggregates and processes raw coverage data for metagenome-assembled genomes (MAGs) quality control analysis. It takes coverage data in TSV format and generates processed coverage reports for downstream MAG quality assessment.

This process is implemented in Bash, which invokes a Python script for coverage data aggregation and processing.

Key Functionality

  • Coverage Data Aggregation: Consolidates raw coverage information from multiple sources into a unified format
  • MAG Coverage Analysis: Processes coverage metrics specifically for metagenome-assembled genome quality control
  • Report Generation: Creates standardized TSV reports containing processed coverage statistics

Input/Output Specification

Inputs

Required Inputs

  • Input File TSV
    • Description: Raw coverage data in tabular format containing coverage metrics for MAG quality control
    • Format: TSV

Outputs

  • Output File TSV
    • Description: Processed coverage report containing aggregated coverage statistics and metrics for MAG quality assessment
    • Format: TSV

Parameters & Settings

No user-configurable parameters are available for this process.

References & Resources

  • Tool Documentation: Contact the team for details on calc_mag_ra.py